Data
A single cell atlas of human and mouse white adipose tissue
See the manuscript, here (open access link here).
Genes can be queried in the dataset online using the Single Cell Portal.
Serialized objects of the final datasets can be found here (Seurat RDS).
Human data:
| Explore Online | Number of Cells | Description | Download full objects | Download “lite” objects |
| All cells | 166,149 | All human WAT cells | human_all.rds- 13.2 GB | human_all_lite.rds – 1.32 GB |
| Adipocytes | 25,871 | Human adipocyte subclusters | human_adipocytes.rds- 2.3 GB | human_adipocytes_lite.rds – 315.4 MB |
| ASPCs | 52,482 | Human adipose stem and progenitor cell subclusters | human_ASPCs.rds- 4.1 GB | human_ASPCs_lite.rds – 347.9 MB |
| Mesothelial Cells | 30,482 | Human mesothelial subclusters | human_mesothelium.rds- 1.8 GB | human_mesothelium_lite.rds – 260.3 MB |
| Vascular Cells | 22,734 | Human vascular subclusters | human_vascular.rds- 1.3 GB | human_vascular_lite.rds – 155.8 MB |
| Immune Cells | 34,268 | Human immune subclusters | human_immune.rds- 2.7 GB | human_immune_lite.rds – 239 MB |
Mouse data:
| Explore Online | Number of Cells | Description | Download | Download “lite” objects |
| All cells | 197,721 | All mouse WAT cells | mouse_all.rds- 15.2 GB | mouse_all_lite.rds – 1.36 GB |
| Adipocytes | 39,934 | Mouse adipocyte subclusters | mouse_adipocytes.rds- 3.3 GB | mouse_adipocytes_lite.rds – 439.4 MB |
| ASPCs | 51,227 | Mouse adipose stem and progenitor cell subclusters | mouse_ASPCs.rds- 3.3 GB | mouse_ASPCs_lite.rds – 288.3 MB |
| Mesothelial Cells | 14,947 | Mouse mesothelial subclusters | mouse_mesothelium.rds- 550 MB | mouse_mesothelium_lite.rds – 107.5 MB |
| Vascular Cells | 7,632 | Mouse vascular subclusters | mouse_vascular.rds- 503 MB | mouse_vascular_lite.rds – 37.8 MB |
| Immune Cells | 70,547 | Mouse immune subclusters | mouse_immune.rds- 4.2 GB | mouse_immune_lite.rds – 364.4 MB |
Note: lite objects were created using the DietSeurat function. They only contain the RNA assay and not the SCT or integrated information.